IGVFFI4335VMIQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7860EWRX(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X029_G2_P027_L003_R3

md5sum

7e87ef7ab6c8c09b6d06a99aa3fdf396

Content MD5sum

51551a46a877a071f4982d1badd60d26

File Size

8.3 GB

Submitted File Name

Multiome_ATAC_X029_G2_L002_P027_S27_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

266376280

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3013AHXL

Multiplexed Samples

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 90 or above years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples