Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
SequenceFile
/
IGVFFI4333PWXH
IGVFFI4333PWXH
released
validated
Json view
File Set
IGVFDS0858CFYH
(single-cell ATAC-seq (SHARE-seq))
Summary
R2 reads from sequencing run 1533
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_1533_R2
buenrostro-bernstein:SS-LS_1533_R2
md5sum
456e482b1553bc5305d41eebf38e0fd7
Content MD5sum
d6e1cd00e534b56e7030f204e6f7a6f3
File Size
93 KB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-1126_L2_SS-PKR-6_SS-V1-2nd-THIRD_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Submitter Comment
This fastq has already been prefiltered with IGVFDS9814BQOF barcode onlist.
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1533
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
1776
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM5211IRON
PrimaryCell
bone marrow
Homo sapiens (female, 19 years) bone marrow cell (cellular sub pool: SS-PKR 6)
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4279WJVY
tsv
fragments
GRCh38 fragments
Jason Buenrostro, Broad
13 GB
validated