IGVFFI4328IJOU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2246GGIL(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X029_G3_P029_L001_R1

md5sum

5ba15c9c088f0e27c53ee0af0e52d5e7

Content MD5sum

68bb9226c162cca0a25054247a9029df

File Size

8.5 GB

Submitted File Name

Multiome_ATAC_X029_G3_L003_P029_S1_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

162421735

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9062CRHH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 90 or above years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples