IGVFFI4328GDEE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9523LMAM(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP005_G3_P053_L002_R3

md5sum

b17642b65ce0dea339f1f91624b4a650

Content MD5sum

9007155c52ea8f5f7dd6698b80750385

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_RP005_G3_L003_P053_S19_L002_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

54759291

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0891NGTB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples