IGVFFI4309JINP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9543SWXT(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP033_G2_P079_L007_R3

md5sum

701a4bcbadc5591d84e4504ad0ba130d

Content MD5sum

96eee3b703f4fef411c4be306853514c

File Size

7.9 GB

Submitted File Name

Multiome_ATAC_RP033_G2_L002_P079_S26_L007_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19U7CA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

113277154

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8786SGJT

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) substantia nigra tissue associated with Parkinson's disease; ... and 6 more samples