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INDEXED
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SequenceFile
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IGVFFI4285ZZFD
IGVFFI4285ZZFD
released
validated
Json view
File Set
IGVFDS5864UGFT
(untransfected prime editing Variant-EFFECTS)
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-THP1-PE2_Exp2_NegControl-PCRrep2_I2
md5sum
2ae4e7e657413889cc08d24e3e4c8004
Content MD5sum
4d1c2a9371e295bb07190564e6f6d222
File Size
1.2 MB
Submitted File Name
230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrepNA-BinNeg-PCRrep2_S402_I2_001.fastq.gz
Sequencing Details
Sequencing Platform
Illumina NextSeq 550
Sequencing Run
1
Illumina Read Type
I2
Index
CTAACTCG:TTGT
Average Read Length
4
Read Count
142419
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM7075RRIN
InVitroSystem
THP-1
THP-1 cell line, male, Homo sapiens modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2)
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford