IGVFFI4283XCYK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4913NONJ(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X048_G1_P049_L001_R2

md5sum

149f14cddb67da2373cbf5ad644c5f99

Content MD5sum

20298f076c7066727b5f75d87676c735

File Size

4.6 GB

Submitted File Name

Multiome_ATAC_X048_G1_L001_P049_S5_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H7VW3DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

230207427

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0003NWYI

MultiplexedSample

posterior cingulate gyrus, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 93 years) substantia nigra tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples