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INDEXED
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SequenceFile
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IGVFFI4283NIEF
IGVFFI4283NIEF
released
validated
Json view
File Set
IGVFDS2402LHFH
(single-cell ATAC-seq (SHARE-seq))
Summary
R2 reads from sequencing run 2441
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2441_R2
buenrostro-bernstein:SS-LS_2441_R2
md5sum
356edb894b7bbcd525c468ebd3f2d310
Content MD5sum
8a4637dff289f1a72ccccf10acbfb97a
File Size
827 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-13_L3_SS-PKR-2_SS-V1-1st-THIRD_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Submitter Comment
This fastq has already been prefiltered with IGVFDS9814BQOF barcode onlist.
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
2441
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
18420420
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM0478TYBC
PrimaryCell
bone marrow
Homo sapiens (male, 26 years) bone marrow cell (cellular sub pool: SS-PKR 2)
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4279WJVY
tsv
fragments
GRCh38 fragments
Jason Buenrostro, Broad
13 GB
validated