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INDEXED
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SequenceFile
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IGVFFI4280RLCU
IGVFFI4280RLCU
preview
validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS5090MUJO
(single-nucleus ATAC-seq (10x multiome))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_ATAC_RP025_G3_P069_L002_I1
md5sum
bd6cc893fb7eb74aee3fe3f9b70ace9b
Content MD5sum
de2089fead6c7a7ae342a136afc5bbb4
File Size
1.4 GB
Submitted File Name
Multiome_ATAC_RP025_G3_L003_P069_S3_L002_I1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
19RTCA4LE
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
8
Read Count
194573378
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM4296CDRL
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 8 more samples