IGVFFI4275CXVM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3420XHWA(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X017_G6_P015_L003_R3

md5sum

b73f52363a4d738fffc5a2e5ae3215b2

Content MD5sum

639ce45a20001350d5515b433febf7ab

File Size

6.7 GB

Submitted File Name

Multiome_ATAC_X017_G6_L006_P015_S28_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

207783520

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7930LHEX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples