IGVFFI4269NNKV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0585JEMM(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP006_G2_P055_L001_I1

md5sum

6608288f5ec8052c56000f7a42266b47

Content MD5sum

2b6d86b503bd734f02f3eda5549fed6b

File Size

485 MB

Submitted File Name

Multiome_ATAC_RP006_G2_L002_P055_S6_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

67247900

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5801EHME

MultiplexedSample

cerebellar cortex, middle temporal gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples