IGVFFI4262PMUA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4617MHLV(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP010_G6_P059_L006_R1

md5sum

1b375a4ae8d86355d81c570208c97f51

Content MD5sum

1ddb186c33d486df45d99689abe689b4

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_RP010_G6_L006_P059_S70_L006_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

55177702

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2055PXMF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples