IGVFFI4247GQHT

released
validated
File Set
IGVFDS0973WJFG(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:auxiliary_file_CRUDO_SSFA2-Auxin0hrs-FF2-BinA-PCR4-Rep1_S73
md5sum
b5cfb8b7d908c9b0be60bb0d9d639fa8
Content MD5sum
ec865a81ffc790d72531e0d4e9ce8c65
File Size
9.9 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/220308B014_CCND1_SSFA2_FAM3C/fastq_trim/SSFA2-Auxin0hrs-FF2-BinA-PCR4-Rep1_S73_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
1
Index
CATAGCGA:GCCA
Average Read Length
21
Read Count
449638

Samples

1 item
Accession
Type
Sample Terms
Summary
In Vitro Systems
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin A for 0-10% expression of SSFA2) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI4247GQHT
Jesse Engreitz, Stanford
912 B
validated

Attribution