IGVFFI4236YRPT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8859FDEI(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP015_G2_P061_L004_R1

md5sum

84871578c213d1d5b9078e00868044e5

Content MD5sum

2bb1f46472b7d80a58c5a1e4fae2dcc7

File Size

2.1 GB

Submitted File Name

Multiome_ATAC_RP015_G2_L002_P061_S18_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

68320948

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3324TBYQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 72 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples