IGVFFI4229HSEV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2380RFGG(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X031_G1_P032_L004_I1

md5sum

a8f03088091a767fd2015b6827e5b7e7

Content MD5sum

dc0cea7d102eb266326a8b41061489f1

File Size

1.3 GB

Submitted File Name

Multiome_RNA_X031_G1_L001_P032_S43_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

199671601

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0810GEIN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples