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IGVFFI4227ZFZB

released
validated
File Set
IGVFDS9693BTRP(single-cell RNA sequencing assay (SHARE-seq))
Summary
R2 reads from sequencing run 244
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2012_R2
bradley-bernstein:SS-LS_244_R2
buenrostro-bernstein:SS-LS_2012_R2
buenrostro-bernstein:SS-LS_244_R2
md5sum
3cc18f8a85d98eb22381f3406663cfae
Content MD5sum
173a4f00579ee50a9601b2ebfb395ef6
File Size
1.1 GB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-137_L2_SS-PKR-130_2022-APRIL-R1-PLATE2-ENTIRE-PLATE_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
244
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
23908943

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)

Files Derived From This File

2 items
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
2.6 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
467 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI3851WKAQ, IGVFFI4227ZFZB
Jason Buenrostro, Broad
1.2 KB
validated