IGVFFI4212SVRM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5259BNNW(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X046_G4_P048_L004_R1

md5sum

5955b1176d0e3af0167b0ac1bc6e6a99

Content MD5sum

df586e31ada1ac4c0f1c05519e342b32

File Size

4.7 GB

Submitted File Name

Multiome_RNA_X046_G4_L004_P048_S16_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

226987310

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6731GWSI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples