IGVFFI4212DNWG

released
validated
File Set
IGVFDS6896VSKX(mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep1_S1_R1
md5sum
32e25c87ef55114045c5d8452b10c998
Content MD5sum
8a43cee666ed39180a4e37bf1da22530
File Size
1.2 GB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/221125_Cohesin_TAPseq_v1/221125_Cohesin_TAPseq_v1/outs/fastq_path/L362_S3_L001_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
1
Lane
1
Illumina Read Type
R1
Average Read Length
28
Read Count
48958695

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI4212DNWG, IGVFFI1732ALVS, IGVFFI7012DKGV
Jesse Engreitz, Stanford
1.0 KB
validated

Attribution