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INDEXED
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SequenceFile
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IGVFFI4202ZWWK
IGVFFI4202ZWWK
released
validated
Json view
File Set
IGVFDS5864UGFT
(untransfected prime editing Variant-EFFECTS)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-THP1-PE2_Exp2_NegControl-PCRrep2_R1
md5sum
d6685f6b3a5b318e9004e36429f2408a
Content MD5sum
66faeaeb82a2762c24df0cae4d3c50ee
File Size
3.9 MB
Submitted File Name
230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrepNA-BinNeg-PCRrep2_S402_R1_001.fastq.gz
Sequencing Details
Sequencing Platform
Illumina NextSeq 550
Sequencing Run
1
Illumina Read Type
R1
Index
CTAACTCG:TTGT
Average Read Length
150
Read Count
142419
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM7075RRIN
InVitroSystem
THP-1
THP-1 cell line, male, Homo sapiens modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2)
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford