IGVFFI4202PDYY

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9516JWYR(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP002_G5_P051_L007_R1

md5sum

c1cb9e2a9d61b609a0c8b6701f8f78de

Content MD5sum

20832a3b65d6cdcc37d47e6edf6fd0fa

File Size

2.0 GB

Submitted File Name

Multiome_ATAC_RP002_G5_L011_P051_S33_L007_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

67172237

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5494QQKW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples