IGVFFI4200EWKJ

released

validated

File Set

IGVFDS0426GXQB(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_KITLG-Auxin0hrs-FF2-BinF-PCR4_S120

md5sum

42c85265c016f79dce86945dc9630c38

Content MD5sum

f639c667d3f7fc6a65075c624f64d8da

File Size

31 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220104B013_Cohesin_KITLG/fastq_trim/Auxin0hrs-FF2-BinF-PCR4_S120_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

TACTTAGC:ATTG

Average Read Length

Read Count

1288245

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM1737WNTH

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of KITLG) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library