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INDEXED
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IGVFFI4195HNMX
IGVFFI4195HNMX
released
validated
Json view
File Set
IGVFDS6896VSKX
(mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep1_S2_I1
md5sum
1e865ddcdf80a3bc15a083c0337f23c5
Content MD5sum
0750ff263486f17f81af7f7e7ab4751a
File Size
337 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/221125_Cohesin_TAPseq_v1/221125_Cohesin_TAPseq_v1/outs/fastq_path/L362_S3_L002_I1_001.fastq.gz
Sequencing Details
Sequencing Platform
Illumina NextSeq 550
Sequencing Run
1
Lane
2
Illumina Read Type
I1
Average Read Length
8
Read Count
47807242
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM9983LVUX
InVitroSystem
HCT116
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI7523LBFP
yaml
seqspec
seqspec of IGVFFI9585YHED, IGVFFI4195HNMX, IGVFFI2367JOHE
Jesse Engreitz, Stanford
1.0 KB
validated
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford