IGVFFI4194VQXL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1769TMSZ(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP007_G6_P055_L004_R3

md5sum

c205b6ba2fdb195c6ba55c2128890498

Content MD5sum

e0bb7dd7e83c190f0a6616d2981fc440

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_RP007_G6_L006_P055_S18_L004_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

56269642

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1887PDIV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples