IGVFFI4176LRVQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7287FFPC(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X046_G2_P047_L003_R2

md5sum

4af2a2617a1c855df057d250a804d963

Content MD5sum

7a1513c083dd5e6d8a7a0066958934e1

File Size

2.6 GB

Submitted File Name

Multiome_ATAC_X046_G2_L002_P047_S14_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

146095801

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7324LMEY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples