IGVFFI4174VUWM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0615WYVU(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP031_G4_P079_L007_R1

md5sum

7f6c0e5c858936f30d62ba47bb137f07

Content MD5sum

771d7ab9b9dc81b8f398b85c96875160

File Size

11 GB

Submitted File Name

Multiome_ATAC_RP031_G4_L004_P079_S12_L007_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19U7CA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

148149738

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1595JOHE

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples