IGVFFI4160SXZK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5017LSEH(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP028_G8_P077_L004_R3

md5sum

5bcefb3fde0844715b340e4068cb8ccd

Content MD5sum

eee7b6afdc4a1feba534c08b18747fd7

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_RP028_G8_L008_P077_S26_L004_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

22F3GTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

60915248

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7205BZYS

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples