{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI4153PMOZ/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI4153PMOZ",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinD-PCRrep1_R2"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released sequence file [IGVFFI4153PMOZ](/sequence-files/IGVFFI4153PMOZ/) has in progress subobject auxiliary set [IGVFDS9517URQU](/auxiliary-sets/IGVFDS9517URQU/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/sequence-files/IGVFFI4153PMOZ/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"content_md5sum": "d68dcf18151da1555393d063f74ddcd5",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T19:44:52.457918+00:00",
"file_format": "fastq",
"file_set": "/auxiliary-sets/IGVFDS9517URQU/",
"file_size": 13920546,
"gene_list_for": [],
"href": "/sequence-files/IGVFFI4153PMOZ/@@download/IGVFFI4153PMOZ.fastq.gz",
"illumina_read_type": "R2",
"index": "ATTATGTT:GTCA",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"loci_list_for": [],
"maximum_read_length": 150,
"md5sum": "521c063151345b411e7f8bdec57a7270",
"mean_read_length": 150,
"minimum_read_length": 150,
"read_count": 399799,
"release_timestamp": "2023-12-20T23:17:30.897700+00:00",
"s3_uri": "s3://igvf-files/2023/12/05/028d35e1-6e49-492b-9d7e-0af8280386dc/IGVFFI4153PMOZ.fastq.gz",
"schema_version": "14",
"seqspecs": [],
"sequencing_platform": "/platform-terms/EFO_0008566/",
"sequencing_run": 1,
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_file_name": "220829_pPPIF_JurkatVFF-Jurkat-PE2A-BFP-pPPIF-Amp_pPPIF2_S18-BioRep3-FFRep2-BinD-PCRrep1_S151_R2_001.fastq.gz",
"summary": "R2 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "028d35e1-6e49-492b-9d7e-0af8280386dc"
}