IGVFFI4144XYII

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1635NGUE(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X035_G3_P035_L003_I1

md5sum

6a530885bd9ead683581d83252d9f936

Content MD5sum

1a0a7974c6033a510ad81b6ad470d6f8

File Size

1.3 GB

Submitted File Name

Multiome_ATAC_X035_G3_L003_P035_S35_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

164529270

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7229GVNA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) substantia nigra tissue; Homo sapiens (female, 84 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples