IGVFFI4144AQFB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9587VFRN(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X041_G8_P041_L002_R2

md5sum

4e57df03db0b67db261b008eecb3eb4d

Content MD5sum

8fe8d2d371086665d5f57b533188cc66

File Size

1.0 GB

Submitted File Name

Multiome_ATAC_X041_G8_L008_P041_S18_L002_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

58614177

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3938LXBP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples