IGVFFI4134WHLG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6077CQVA(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X041_G6_P041_L002_R3

md5sum

4c31e2a875c867824a40485e7f5cd97e

Content MD5sum

7d40c49d77f1db206090199aff11e2ab

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_X041_G6_L006_P041_S16_L002_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

55028466

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0027DAWZ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples