Home

IGVFFI4103OUZF

released
validated
File Set
IGVFDS5941UNYO(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R3 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp9_atac_10x1_NGS2_r3
md5sum
e3cf70fd32c4789512b751dd0fa0c63e
Content MD5sum
35babb79e33cdaf3d247dde228a7aa49
File Size
11 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230707_IGVF9_McGinnis/ATAC/FASTQ/ATAC_1CMAS_IGVF9_A_S21_L006_R3_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JGVLT3
Lane
6
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R3
Average Read Length
50
Read Count
368144647

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.3 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI6559YOVP, IGVFFI4103OUZF, IGVFFI7980UOIM, IGVFFI4530QVSQ
Ansuman Satpathy, Stanford
1.4 KB
validated