IGVFFI4092ZHYN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6760HDFY(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X035_G5_P035_L003_R1

md5sum

feca7fa54caf849af48d53a819431d4b

Content MD5sum

46ef248c4016e85415f297290fffdd30

File Size

10 GB

Submitted File Name

Multiome_ATAC_X035_G5_L005_P035_S37_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

191835180

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2818XKIR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) substantia nigra tissue; Homo sapiens (female, 84 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples