IGVFFI4060ZPSK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0247BVMI(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP006_G5_P055_L002_R3

md5sum

55c4619a144fdd3c7a5501c806b054f1

Content MD5sum

b246cd0dcd12450b9793ba5a9ec3b0c5

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_RP006_G5_L005_P055_S9_L002_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

59178589

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3715NVPJ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples