IGVFFI4056YITN

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI4056YITN/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI4056YITN",
10    "aliases": [
11        "harinder-singh:donor1_Bcell_multiome_GEX_NGS_Day5_6_L001_I1_corrected"
12    ],
13    "assay_titles": [
14        "10x multiome"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012041/",
19        "component": "networks"
20    },
21    "checkfiles_version": "v19",
22    "content_md5sum": "e0b9a22000af041272dc503a2ff32c0d",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2025-03-17T19:05:47.526235+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS8419ZMNL/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS8419ZMNL",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0003109/",
38            "term_name": "single-nucleus RNA sequencing assay"
39        },
40        "controlled_access": true,
41        "data_use_limitation_summaries": [
42            "HMB"
43        ],
44        "file_set_type": "experimental data",
45        "samples": [
46            {
47                "@id": "/in-vitro-systems/IGVFSM1056LJKY/",
48                "@type": [
49                    "InVitroSystem",
50                    "Biosample",
51                    "Sample",
52                    "Item"
53                ],
54                "accession": "IGVFSM1056LJKY",
55                "classifications": [
56                    "differentiated cell specimen"
57                ],
58                "sample_terms": [
59                    {
60                        "@id": "/sample-terms/CL_0000236/",
61                        "status": "released",
62                        "term_name": "B cell"
63                    }
64                ],
65                "status": "preview",
66                "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days",
67                "targeted_sample_term": {
68                    "@id": "/sample-terms/CL_0000980/",
69                    "status": "released",
70                    "term_name": "plasmablast"
71                },
72                "taxa": "Homo sapiens"
73            }
74        ],
75        "status": "preview",
76        "summary": "single-nucleus RNA sequencing assay (10x multiome)"
77    },
78    "file_size": 411579066,
79    "gene_list_for": [],
80    "href": "/sequence-files/IGVFFI4056YITN/@@download/IGVFFI4056YITN.fastq.gz",
81    "illumina_read_type": "I1",
82    "input_file_for": [
83        "/matrix-files/IGVFFI9658NBQE/",
84        "/tabular-files/IGVFFI8327TWIN/",
85        "/tabular-files/IGVFFI5790ZRAD/"
86    ],
87    "integrated_in": [],
88    "lab": {
89        "@id": "/labs/harinder-singh/",
90        "title": "Harinder Singh, University of Pittsburgh"
91    },
92    "lane": 1,
93    "loci_list_for": [],
94    "maximum_read_length": 10,
95    "md5sum": "64b8d6c699e2063ca61119dace2c91bc",
96    "mean_read_length": 10,
97    "minimum_read_length": 10,
98    "quality_metrics": [],
99    "read_count": 59718401,
100    "s3_uri": "s3://igvf-restricted-files/2025/03/17/834ecb33-015d-4e82-9fb2-da30b8ea9b86/IGVFFI4056YITN.fastq.gz",
101    "schema_version": "15",
102    "seqspecs": [
103        "/configuration-files/IGVFFI8944OGLU/"
104    ],
105    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
106    "sequencing_platform": {
107        "@id": "/platform-terms/EFO_0008637/",
108        "status": "released",
109        "term_name": "Illumina NovaSeq 6000"
110    },
111    "sequencing_run": 1,
112    "status": "preview",
113    "submitted_by": {
114        "@id": "/users/d2668d67-5e6f-49e8-82ca-7bb12229f892/",
115        "title": "Nicholas Pease"
116    },
117    "submitted_file_name": "/ix/djishnu/peasena/primary_multiome/donor1_upmc/fastqs/scRNA/NP002_03_120222_Singh_Multiome_GEX_LAF4451A13_S18_L001_I1_001.fastq.gz",
118    "summary": "I1 reads from sequencing run 1",
119    "upload_status": "validated",
120    "uuid": "834ecb33-015d-4e82-9fb2-da30b8ea9b86"
121}