IGVFFI4048OOEW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8859FDEI(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP015_G2_P061_L002_R1

md5sum

c1e35fde9edd567a65c6b6b52d09187e

Content MD5sum

e8608f62defa7e25b3702f1200c84567

File Size

2.2 GB

Submitted File Name

Multiome_ATAC_RP015_G2_L002_P061_S18_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

68811328

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3324TBYQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 72 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples