IGVFFI4039SPFE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9832WUNH(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP031_G7_P079_L006_I1

md5sum

5555230530869d0551e91603fcc35d00

Content MD5sum

0a8ea01f15282eeee4fbe9a2409e2a7a

File Size

1.3 GB

Submitted File Name

Multiome_ATAC_RP031_G7_L007_P079_S15_L006_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19U7CA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

165654535

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0980JQZM

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples