IGVFFI4038QJIN

released
validated
File Set
IGVFDS2425RTOU(CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus)
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinA-PCRrep2_I2
md5sum
020dd8c51272904206ae22b020a99000
Content MD5sum
29539e4336f5ac4b7b09aca1616645aa
File Size
3.1 MB
Submitted File Name
220829_pPPIF_JurkatVFF-Jurkat-PE2A-BFP-pPPIF-Amp_pPPIF2_S18-BioRep3-FFRep2-BinA-PCRrep2_S205_I2_001.fastq.gz
Checkfiles Version

Sequencing Details

Sequencing Platform
Sequencing Run
1
Illumina Read Type
I2
Index
CTGTGGCG:ACTG
Average Read Length
4
Read Count
389618

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Jurkat cell line, male, Homo sapiens (sorting details: FACS bin for 0-10% expression of PPIF) treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours, modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library

Attribution