IGVFFI4035VSLT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0855IFDW(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP012_G2_P059_L005_R2

md5sum

68c371fa2c083eb42a480a8c02967eae

Content MD5sum

0a734daff277337ab935d5d5efe0de6f

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_RP012_G2_L002_P059_S82_L005_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

106582024

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3226MLFV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples