IGVFFI4035JBML

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5914USAW(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X053_G8_P071_L007_I1

md5sum

ce29002944b79948495f567bab194924

Content MD5sum

b292097965cc3c144db6556ff31c0c25

File Size

1.3 GB

Submitted File Name

Multiome_ATAC_X053_G8_L008_P071_S52_L007_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

162311059

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8322GNNB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 73 years) middle temporal gyrus tissue; ... and 8 more samples