IGVFFI4031AZNK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5345ASRP(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X034_G6_P036_L004_R2

md5sum

e8216b475629a7e094a55b19bdc62a19

Content MD5sum

2b9585b2e6691ca5eaab4d046773e271

File Size

11 GB

Submitted File Name

Multiome_RNA_X034_G6_L006_P036_S44_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

101

Read Count

194808669

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3252XAWB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 80 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 10 more samples