IGVFFI4025BVQB

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI4025BVQB/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI4025BVQB",
    "aliases": [
        "jesse-engreitz:sequence_data_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep3_bin3"
    ],
    "assay_titles": [
        "CRISPR FlowFISH screen"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "content_md5sum": "db2b210a2c86035434e946e1c74667ec",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2023-12-05T00:47:18.400334+00:00",
    "description": "bioRep3_FlowFISH_bin3",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/auxiliary-sets/IGVFDS6384XJTD/",
        "accession": "IGVFDS6384XJTD",
        "file_set_type": "gRNA sequencing",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM6408QEFG/",
                "accession": "IGVFSM6408QEFG",
                "classifications": [
                    "cell line"
                ],
                "modifications": [
                    {
                        "@id": "/crispr-modifications/b4bc725a-8eeb-4180-9789-bece3516c0c1/",
                        "modality": "interference",
                        "summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
                    }
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000753/",
                        "term_name": "TeloHAEC"
                    }
                ],
                "summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS bin for 51-75% expression of TLNRD1) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
                "taxa": "Homo sapiens"
            }
        ],
        "summary": "gRNA sequencing for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting candidate cis-regulatory elements in a genomic locus"
    },
    "file_size": 86367428,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI4025BVQB/@@download/IGVFFI4025BVQB.fastq.gz",
    "illumina_read_type": "R1",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/jesse-engreitz/",
        "title": "Jesse Engreitz, Stanford"
    },
    "loci_list_for": [],
    "maximum_read_length": 25,
    "md5sum": "cab22d505d19793f14ca5607effaacae",
    "mean_read_length": 25,
    "minimum_read_length": 25,
    "read_count": 3695062,
    "release_timestamp": "2024-02-07T19:10:26.775435+00:00",
    "s3_uri": "s3://igvf-files/2023/12/05/39b60af7-64cb-46c4-a9a9-efc143b92072/IGVFFI4025BVQB.fastq.gz",
    "schema_version": "14",
    "seqspecs": [],
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0008566/",
        "term_name": "Illumina NextSeq 550"
    },
    "sequencing_run": 1,
    "status": "released",
    "submitted_by": {
        "@id": "/users/4b2083b4-24c1-41d8-9daa-e79299f00d6e/",
        "title": "Ronghao Zhou"
    },
    "submitted_file_name": "/Users/ronghao/Desktop/Research/data/eRZ10_FlowFISH/TLNRD1/eRZ10_FlowFISH_fastq/T3_bin3_S29_R1_001.fastq.gz",
    "summary": "R1 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "39b60af7-64cb-46c4-a9a9-efc143b92072"
}