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INDEXED
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SequenceFile
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IGVFFI4009QGFW
IGVFFI4009QGFW
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS1158PFBA
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X040_G8_P042_L002_I2
md5sum
3c852ac8947eaf2b0eae59984a03f77c
Content MD5sum
cf549777a23f0c90e6e14c9bbc863054
File Size
650 MB
Submitted File Name
Multiome_RNA_X040_G8_L008_P042_S10_L002_I2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
222YMLLT3
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
108897685
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM7148SYPE
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples