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IGVFFI4007ODFY

released
validated
File Set
IGVFDS7886RKXK(Proliferation CRISPR cutting screen integrating a guide (sgRNA) library targeting phenotype-associated variants genome-wide)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
daniel-bauer:ChrX_Screen_no_deaminase_day14_rep1_read1
md5sum
926d2c9ddfc2271e688a987fca5ebfc6
Content MD5sum
3b655240795424c7320de7cbffc0d6e0
File Size
67 MB
Submitted File Name
/data/pinello/PROJECTS/2024_02_EC_ChrX/submitted_files/ChrX_Screen_#CAG_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Index
CAG
Average Read Length
150
Read Count
1593252

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HUDEP-2 cell line, Homo sapiens modified with CRISPR cutting SpRY, transduced (lentivirus) with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
csv
guide quantifications
guide quantifications
Daniel Bauer, HSCI
345 KB
validated

Attribution

Award
HG012010
Principal Investigator(s)
Contact P.I.
Luca Pinello
Lab
Daniel Bauer, HSCI