IGVFFI4006YBRE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7541UESD(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X043_G5_P043_L007_R3

md5sum

8a4e244734046e9dd8c2e77686b077e8

Content MD5sum

dc349d88e3232db358d187fc4497124e

File Size

2.4 GB

Submitted File Name

Multiome_ATAC_X043_G5_L005_P043_S31_L007_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

78429090

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7586ZAET

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples