IGVFFI3993SZRV

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI3993SZRV/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3993SZRV",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "content_md5sum": "e7456d43f1dcd9aca81f6754f7d73080",
19    "content_type": "reads",
20    "controlled_access": false,
21    "creation_timestamp": "2023-10-06T03:08:41.308015+00:00",
22    "externally_hosted": false,
23    "file_format": "fastq",
24    "file_set": {
25        "@id": "/measurement-sets/IGVFDS6418RIAE/",
26        "@type": [
27            "MeasurementSet",
28            "FileSet",
29            "Item"
30        ],
31        "accession": "IGVFDS6418RIAE",
32        "assay_term": {
33            "@id": "/assay-terms/OBI_0003109/",
34            "term_name": "single-nucleus RNA sequencing assay"
35        },
36        "file_set_type": "experimental data",
37        "samples": [
38            {
39                "@id": "/multiplexed-samples/IGVFSM2405DHLE/",
40                "@type": [
41                    "MultiplexedSample",
42                    "Sample",
43                    "Item"
44                ],
45                "accession": "IGVFSM2405DHLE",
46                "classifications": [
47                    "tissue",
48                    "multiplexed sample"
49                ],
50                "disease_terms": [],
51                "modifications": [],
52                "sample_terms": [
53                    {
54                        "@id": "/sample-terms/UBERON_0000948/",
55                        "status": "released",
56                        "term_name": "heart"
57                    },
58                    {
59                        "@id": "/sample-terms/UBERON_0002107/",
60                        "status": "released",
61                        "term_name": "liver"
62                    }
63                ],
64                "status": "released",
65                "summary": "multiplexed sample: Mus musculus CAST/EiJ (male, 69 days) liver tissue; Mus musculus 129S1J (female, 72 days) heart tissue; ... and 126 more samples",
66                "taxa": "Mus musculus",
67                "treatments": []
68            }
69        ],
70        "status": "released",
71        "summary": "Parse SPLiT-seq"
72    },
73    "file_size": 5742254544,
74    "flowcell_id": "HTH33DSX5",
75    "gene_list_for": [],
76    "href": "/sequence-files/IGVFFI3993SZRV/@@download/IGVFFI3993SZRV.fastq.gz",
77    "illumina_read_type": "R2",
78    "input_file_for": [
79        "/matrix-files/IGVFFI5710WYPP/"
80    ],
81    "integrated_in": [],
82    "lab": {
83        "@id": "/labs/ali-mortazavi/",
84        "title": "Ali Mortazavi, UCI"
85    },
86    "lane": 4,
87    "loci_list_for": [],
88    "maximum_read_length": 86,
89    "md5sum": "4b2312b7762997fe621b0b708c791759",
90    "mean_read_length": 86,
91    "minimum_read_length": 86,
92    "quality_metrics": [],
93    "read_count": 164268349,
94    "read_names": [
95        "Read 2"
96    ],
97    "release_timestamp": "2025-04-18T22:57:25.360579+00:00",
98    "s3_uri": "s3://igvf-files/2023/10/06/3056eeca-1f4b-43b1-bd25-6e7827734b93/IGVFFI3993SZRV.fastq.gz",
99    "schema_version": "15",
100    "seqspecs": [
101        "/configuration-files/IGVFFI4617KIMP/"
102    ],
103    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
104    "sequencing_platform": {
105        "@id": "/platform-terms/EFO_0008637/",
106        "status": "released",
107        "term_name": "Illumina NovaSeq 6000"
108    },
109    "sequencing_run": 4,
110    "status": "released",
111    "submitted_by": {
112        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
113        "title": "Diane Trout"
114    },
115    "submitted_file_name": "igvf_004/nova1/igvf_004_B08_D_nova_N1_L004_R2.fastq.gz",
116    "summary": "R2 reads from sequencing run 4",
117    "upload_status": "validated",
118    "uuid": "3056eeca-1f4b-43b1-bd25-6e7827734b93"
119}