IGVFFI3987KSLE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0028AWOA(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP013_G7_P061_L001_R2

md5sum

2dbfd42bd4b32d6dfc26d69ee610b893

Content MD5sum

3aa58f538eb87ffa22044cb9c9807bd7

File Size

1.0 GB

Submitted File Name

Multiome_ATAC_RP013_G7_L007_P061_S7_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

60010899

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7012MRMQ

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 14 more samples