IGVFFI3984UWRK

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI3984UWRK/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3984UWRK",
10    "aliases": [
11        "harinder-singh:multiplexed_perturbation_scRNAseq_20240212_GEX_NGS_2_LAF7052A9_L003_I1"
12    ],
13    "assay_titles": [
14        "scRNA-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012041/",
19        "component": "networks"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "064d9150883f52c98a6dea200257015b",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2025-03-05T02:29:04.764038+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS5867EPVA/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS5867EPVA",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002631/",
38            "term_name": "single-cell RNA sequencing assay"
39        },
40        "controlled_access": true,
41        "data_use_limitation_summaries": [
42            "HMB"
43        ],
44        "file_set_type": "experimental data",
45        "samples": [
46            {
47                "@id": "/multiplexed-samples/IGVFSM5472KWSO/",
48                "@type": [
49                    "MultiplexedSample",
50                    "Sample",
51                    "Item"
52                ],
53                "accession": "IGVFSM5472KWSO",
54                "classifications": [
55                    "differentiated cell specimen",
56                    "multiplexed sample"
57                ],
58                "disease_terms": [],
59                "modifications": [],
60                "sample_terms": [
61                    {
62                        "@id": "/sample-terms/CL_0000236/",
63                        "status": "released",
64                        "term_name": "B cell"
65                    }
66                ],
67                "status": "preview",
68                "summary": "multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days; ... and 12 more samples",
69                "taxa": "Homo sapiens",
70                "treatments": []
71            }
72        ],
73        "status": "preview",
74        "summary": "scRNA-seq"
75    },
76    "file_size": 2273238979,
77    "gene_list_for": [],
78    "href": "/sequence-files/IGVFFI3984UWRK/@@download/IGVFFI3984UWRK.fastq.gz",
79    "illumina_read_type": "I1",
80    "input_file_for": [
81        "/matrix-files/IGVFFI3987VJYL/"
82    ],
83    "integrated_in": [],
84    "lab": {
85        "@id": "/labs/harinder-singh/",
86        "title": "Harinder Singh, University of Pittsburgh"
87    },
88    "lane": 3,
89    "loci_list_for": [],
90    "maximum_read_length": 10,
91    "md5sum": "e599dafca2bafee1c793272e6a45330e",
92    "mean_read_length": 10,
93    "minimum_read_length": 10,
94    "quality_metrics": [],
95    "read_count": 374481661,
96    "s3_uri": "s3://igvf-restricted-files/2025/03/05/73769a70-9818-4d07-9bc7-cab8178a4847/IGVFFI3984UWRK.fastq.gz",
97    "schema_version": "15",
98    "seqspecs": [
99        "/configuration-files/IGVFFI0499RSOX/"
100    ],
101    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
102    "sequencing_platform": {
103        "@id": "/platform-terms/EFO_0008637/",
104        "status": "released",
105        "term_name": "Illumina NovaSeq 6000"
106    },
107    "sequencing_run": 2,
108    "status": "preview",
109    "submitted_by": {
110        "@id": "/users/d2668d67-5e6f-49e8-82ca-7bb12229f892/",
111        "title": "Nicholas Pease"
112    },
113    "submitted_file_name": "/ix/djishnu/Common_Folder/Pease_Data/20240318_PerturbSeq_2/Singh_021224_2_Pool_5Pv2_GEX_LAF7052A9_S2_L003_I1_001.fastq.gz",
114    "summary": "I1 reads from sequencing run 2",
115    "upload_status": "validated",
116    "uuid": "73769a70-9818-4d07-9bc7-cab8178a4847"
117}