IGVFFI3979XEST

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9150VYPU(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X027_G1_P025_L001_I1

md5sum

34ed02d0e4b6f67613c6b46fe04c953c

Content MD5sum

5345b0543efc05365192fc7959150323

File Size

1.5 GB

Submitted File Name

Multiome_ATAC_X027_G1_L001_P025_S10_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

215169072

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2801FMBF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 71 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples