IGVFFI3978GWTM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0326OLER(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X025_G4_P023_L003_I1

md5sum

76572b5e7df6c3848891a41432349456

Content MD5sum

b2b1a15b732ef096cecb4d53fe01404e

File Size

1.2 GB

Submitted File Name

Multiome_ATAC_X025_G4_L004_P023_S36_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

159322706

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5024AIVR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 87 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples