IGVFFI3973ZCBS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0554XCBM(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X050_G5_P065_L005_R3

md5sum

9370e120a4c5b8ad2b11d978a0d0fc1e

Content MD5sum

f5b442a0d7620da34ee2767410847477

File Size

2.5 GB

Submitted File Name

Multiome_ATAC_X050_G5_L005_P065_S35_L005_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

80946179

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9388AJKM

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples